If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ), 'gf_id' => 'HOM05D000887', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000887' ), 'data_identifier' => 'HOM05D000887', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000887', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '675', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p36560' => 'bna', 'A02p03650' => 'bna', 'A02p13560' => 'bna', 'A03p40430' => 'bna', 'A04p09810' => 'bna', 'A04p10760' => 'bna', 'A05p21010' => 'bna', 'A05p31990' => 'bna', 'A06p04440' => 'bna', 'A08p09830' => 'bna', 'A09p38120' => 'bna', 'A09p38590' => 'bna', 'A10p22640' => 'bna', 'Aa31LG10G5320' => 'aar', 'Aa31LG11G13080' => 'aar', 'Aa31LG2G2910' => 'aar', 'Aa31LG8G4700' => 'aar', 'Aa31LG9G17480' => 'aar', 'Aa31sc348G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1114' => 'aag', 'Actinidia06486' => 'ach', 'Actinidia08523' => 'ach', 'Actinidia17203' => 'ach', 'Actinidia18890' => 'ach', 'Actinidia40203' => 'ach', 'Ah.01g012260' => 'amhyb', 'Ah.10g032450' => 'amhyb', 'Ah.13g071730' => 'amhyb', 'AL1G55110' => 'aly', 'AL1G55330' => 'aly', 'AL2G23890' => 'aly', 'AL3G30980' => 'aly', 'AL6G27540' => 'aly', 'AL6G34480' => 'aly', 'AL6G39010' => 'aly', 'AL7G44490' => 'aly', 'AL7G46360' => 'aly', 'Aqoxy249s005' => 'aox', 'Aqoxy2G03175' => 'aox', 'Aqoxy3G00018' => 'aox', 'Aqoxy3G04265' => 'aox', 'Aqoxy5G00544' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KDC5W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4G6J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A863J5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8PKWS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G39DTN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GI7YFN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HA9E1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LPXF14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PJ2I0S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S2QYAG' => 'arhy', 'AT1G48470' => 'ath', 'AT1G66200' => 'ath', 'AT3G17820' => 'ath', 'AT5G16570' => 'ath', 'AT5G35630' => 'ath', 'AT5G37600' => 'ath', 'ATR0626G264' => 'atr', 'ATR0626G359' => 'atr', 'ATR0691G009' => 'atr', 'ATR0753G033' => 'atr', 'ATR0753G091' => 'atr', 'Atru.chr1.1985' => 'acertr', 'Atru.chr11.1172' => 'acertr', 'Atru.chr4.2669' => 'acertr', 'AUR62015229' => 'cqu', 'AUR62017693' => 'cqu', 'AUR62037667' => 'cqu', 'AUR62040382' => 'cqu', 'AUR62041056' => 'cqu', 'AUR62041208' => 'cqu', 'BcaB01g06131' => 'bca', 'BcaB02g11401' => 'bca', 'BcaB04g18023' => 'bca', 'BcaB04g18968' => 'bca', 'BcaB04g20813' => 'bca', 'BcaB05g24160' => 'bca', 'BcaB05g24161' => 'bca', 'BcaB06g26952' => 'bca', 'BcaB06g27106' => 'bca', 'BcaB07g33751' => 'bca', 'BcaB08g35468' => 'bca', 'BcaB08g36838' => 'bca', 'BcaC01g01413' => 'bca', 'BcaC01g03727' => 'bca', 'BcaC02g09485' => 'bca', 'BcaC02g09590' => 'bca', 'BcaC03g14736' => 'bca', 'BcaC03g18502' => 'bca', 'BcaC04g18866' => 'bca', 'BcaC05g27565' => 'bca', 'BcaC05g28754' => 'bca', 'BcaC07g37653' => 'bca', 'BcaC07g41658' => 'bca', 'BcaC08g43041' => 'bca', 'BcaC08g43855' => 'bca', 'BcaC09g48742' => 'bca', 'BcaNung02029' => 'bca', 'BolC1t04599H' => 'bol', 'BolC2t06761H' => 'bol', 'BolC2t08319H' => 'bol', 'BolC3t17206H' => 'bol', 'BolC4t25912H' => 'bol', 'BolC4t26018H' => 'bol', 'BolC5t32260H' => 'bol', 'BolC5t33588H' => 'bol', 'BolC5t33996H' => 'bol', 'BolC6t35424H' => 'bol', 'BolC6t36392H' => 'bol', 'BolC7t42059H' => 'bol', 'BolC7t44857H' => 'bol', 'BolC8t48027H' => 'bol', 'BolC9t58890H' => 'bol', 'BraA01t03720Z' => 'bra', 'BraA02t05333Z' => 'bra', 'BraA02t06413Z' => 'bra', 'BraA03t13200Z' => 'bra', 'BraA04t16642Z' => 'bra', 'BraA04t16740Z' => 'bra', 'BraA05t21005Z' => 'bra', 'BraA05t22030Z' => 'bra', 'BraA06t23649Z' => 'bra', 'BraA08t32851Z' => 'bra', 'BraA08t32977Z' => 'bra', 'BraA08t33821Z' => 'bra', 'BraA09t39327Z' => 'bra', 'BraA10t42606Z' => 'bra', 'BraA10t44325Z' => 'bra', 'C01p46390' => 'bna', 'C02p08440' => 'bna', 'C02p21870' => 'bna', 'C03p49240' => 'bna', 'C04p43320' => 'bna', 'C04p44480' => 'bna', 'C05p35480' => 'bna', 'C05p48520' => 'bna', 'C05p53200' => 'bna', 'C06p03010' => 'bna', 'C09p24080' => 'bna', 'C09p60580' => 'bna', 'CAN.G222.55' => 'can', 'CAN.G344.11' => 'can', 'CAN.G519.17' => 'can', 'CAN.G522.8' => 'can', 'CAN.G525.8' => 'can', 'CAN.G733.6' => 'can', 'CANSAT21G0131' => 'cansat', 'CANSAT78G0675' => 'cansat', 'CARHR038100' => 'chi', 'CARHR093170' => 'chi', 'CARHR196640' => 'chi', 'CARHR215260' => 'chi', 'CARHR217810' => 'chi', 'CARHR260030' => 'chi', 'CARHR292180' => 'chi', 'Carub.0001s3760' => 'cru', 'Carub.0002s1219' => 'cru', 'Carub.0003s1753' => 'cru', 'Carub.0006s1478' => 'cru', 'Carub.0007s3137' => 'cru', 'Carub.0007s3276' => 'cru', 'Ca_00605_v3' => 'car', 'Ca_17091_v3' => 'car', 'Ca_18524_v3' => 'car', 'Ca_25355_v3' => 'car', 'CBR_g12306' => 'cbr', 'CBR_g12310' => 'cbr', 'CBR_g31764' => 'cbr', 'CBR_g31766' => 'cbr', 'CBR_g31773' => 'cbr', 'CBR_g31777' => 'cbr', 'CBR_g32628' => 'cbr', 'CBR_g32642' => 'cbr', 'CBR_g32643' => 'cbr', 'CBR_g32648' => 'cbr', 'CBR_g32652' => 'cbr', 'CBR_g32655' => 'cbr', 'CBR_g32678' => 'cbr', 'CBR_g36867' => 'cbr', 'CBR_g40109' => 'cbr', 'CBR_g40112' => 'cbr', 'CBR_g4160' => 'cbr', 'CBR_g4161' => 'cbr', 'CBR_g46663' => 'cbr', 'CBR_g46666' => 'cbr', 'CBR_g52084' => 'cbr', 'CBR_g52093' => 'cbr', 'CBR_g81796' => 'cbr', 'CBR_g86320' => 'cbr', 'Cc00_g07990' => 'ccan', 'Cc03_g02940' => 'ccan', 'Cc04_g05960' => 'ccan', 'Cc07_g13290' => 'ccan', 'CDE02G0193' => 'cde', 'CDE05G0397' => 'cde', 'CDE05G0526' => 'cde', 'CDE06G2690' => 'cde', 'CDE07G0452' => 'cde', 'Cfa007793' => 'cfa', 'Cfa007910' => 'cfa', 'Cfa008734' => 'cfa', 'Cfa015555' => 'cfa', 'Cfa020631' => 'cfa', 'Cfa025630' => 'cfa', 'Ciclev10005007m.g' => 'ccl', 'Ciclev10011785m.g' => 'ccl', 'Ciclev10031939m.g' => 'ccl', 'CiPaw.01G157900' => 'cil', 'CiPaw.02G090300' => 'cil', 'CiPaw.03G073300' => 'cil', 'CiPaw.04G048000' => 'cil', 'CiPaw.05G168500' => 'cil', 'CiPaw.16G097000' => 'cil', 'ClCG03G008830' => 'cla', 'ClCG05G005520' => 'cla', 'ClCG05G011390' => 'cla', 'ClCG09G004580' => 'cla', 'COL.COLO4_13418' => 'col', 'COL.COLO4_21622' => 'col', 'COL.COLO4_25550' => 'col', 'COL.COLO4_32702' => 'col', 'COL.COLO4_33549' => 'col', 'COL.COLO4_38556' => 'col', 'Cpa.g.sc116.73' => 'cpa', 'Cpa.g.sc16.50' => 'cpa', 'Cpa.g.sc298.1' => 'cpa', 'Cpa.g.sc3.364' => 'cpa', 'Cre02.g113200' => 'cre', 'Cre03.g207250' => 'cre', 'Cre12.g530600' => 'cre', 'Cre12.g530650' => 'cre', 'CsaV3_3G013840' => 'csa', 'CsaV3_3G021030' => 'csa', 'CsaV3_5G023920' => 'csa', 'CsaV3_7G030560' => 'csa', 'CSS0007224' => 'camsi', 'CSS0007310' => 'camsi', 'CSS0011691' => 'camsi', 'CSS0015313' => 'camsi', 'CSS0026308' => 'camsi', 'CSS0026524' => 'camsi', 'CSS0034978' => 'camsi', 'CSS0037306' => 'camsi', 'CSS0039174' => 'camsi', 'CSS0039720' => 'camsi', 'DCAR_003425' => 'dca', 'DCAR_010110' => 'dca', 'DCAR_010111' => 'dca', 'DCAR_011632' => 'dca', 'DCAR_014164' => 'dca', 'DCAR_018651' => 'dca', 'DCAR_023452' => 'dca', 'DCAR_027142' => 'dca', 'DCAR_030389' => 'dca', 'DCAR_031586' => 'dca', 'Dinv17605' => 'din', 'Dinv19046' => 'din', 'Dinv28184' => 'din', 'Dinv38364' => 'din', 'Dinv44467' => 'din', 'Duzib052G0102' => 'dzi', 'Duzib084G0546' => 'dzi', 'Duzib132G1227' => 'dzi', 'Duzib133G0346' => 'dzi', 'Duzib138G1015' => 'dzi', 'Duzib151G1072' => 'dzi', 'Duzib248G0631' => 'dzi', 'ECA232G4905' => 'eca', 'ECA234G3223' => 'eca', 'ECA238G0036' => 'eca', 'ECA238G2940' => 'eca', 'ECA246G3671' => 'eca', 'EL10Ac3g06522' => 'bvu', 'EL10Ac9g22944' => 'bvu', 'Eucgr.B01163' => 'egr', 'Eucgr.B02974' => 'egr', 'Eucgr.F02872' => 'egr', 'Eucgr.G02570' => 'egr', 'Eucgr.J01606' => 'egr', 'Eucgr.J01607' => 'egr', 'Eucgr.J01610' => 'egr', 'Eucgr.J01611' => 'egr', 'Eucgr.K02283' => 'egr', 'Eucgr.L02175' => 'egr', 'Eucgr.L02302' => 'egr', 'FAN04G0392' => 'fan', 'FAN04G2067' => 'fan', 'FAN07G0663' => 'fan', 'FAN07G0824' => 'fan', 'FAN08G3313' => 'fan', 'FAN12G2221' => 'fan', 'FAN12G3143' => 'fan', 'FAN13G2989' => 'fan', 'FAN17G1152' => 'fan', 'FAN17G1297' => 'fan', 'FAN17G1330' => 'fan', 'FAN18G0684' => 'fan', 'FAN19G0652' => 'fan', 'FAN22G1918' => 'fan', 'FAN23G2133' => 'fan', 'FAN26G0528' => 'fan', 'FAN28G1592' => 'fan', 'FvH4_1g30220' => 'fve', 'FvH4_3g32400' => 'fve', 'FvH4_4g14190' => 'fve', 'FvH4_4g36850' => 'fve', 'FvH4_5g17650' => 'fve', 'Glyma.02G243901' => 'gma', 'Glyma.02G244000' => 'gma', 'Glyma.07G104500' => 'gma', 'Glyma.09G173200' => 'gma', 'Glyma.11G215500' => 'gma', 'Glyma.12G109202' => 'gma', 'Glyma.13G210800' => 'gma', 'Glyma.14G213300' => 'gma', 'Glyma.15G102000' => 'gma', 'Glyma.18G041100' => 'gma', 'Gohir.A01G012900' => 'ghi', 'Gohir.A02G025100' => 'ghi', 'Gohir.A04G107500' => 'ghi', 'Gohir.A07G175800' => 'ghi', 'Gohir.A09G200500' => 'ghi', 'Gohir.A11G168500' => 'ghi', 'Gohir.A13G059900' => 'ghi', 'Gohir.D01G014100' => 'ghi', 'Gohir.D02G032300' => 'ghi', 'Gohir.D04G146900' => 'ghi', 'Gohir.D07G182900' => 'ghi', 'Gohir.D09G169550' => 'ghi', 'Gohir.D09G194700' => 'ghi', 'Gohir.D11G174800' => 'ghi', 'Gohir.D13G062100' => 'ghi', 'Gorai.001G203300' => 'gra', 'Gorai.002G015900' => 'gra', 'Gorai.005G035800' => 'gra', 'Gorai.006G191100' => 'gra', 'Gorai.006G218100' => 'gra', 'Gorai.007G187300' => 'gra', 'Gorai.012G133400' => 'gra', 'Gorai.013G070600' => 'gra', 'GSVIVG01008483001' => 'vvi', 'GSVIVG01011072001' => 'vvi', 'GSVIVG01012040001' => 'vvi', 'GSVIVG01017868001' => 'vvi', 'GSVIVG01026235001' => 'vvi', 'GSVIVG01030697001' => 'vvi', 'HanXRQChr05g0161531' => 'han', 'HanXRQChr07g0191821' => 'han', 'HanXRQChr07g0191891' => 'han', 'HanXRQChr10g0310191' => 'han', 'HanXRQChr11g0353431' => 'han', 'HanXRQChr12g0359481' => 'han', 'HanXRQChr13g0402821' => 'han', 'HanXRQChr13g0406231' => 'han', 'HanXRQChr14g0444601' => 'han', 'HanXRQChr14g0444781' => 'han', 'HanXRQChr15g0482901' => 'han', 'HanXRQChr16g0507201' => 'han', 'HanXRQChr16g0507211' => 'han', 'HanXRQChr16g0511561' => 'han', 'HanXRQChr16g0521691' => 'han', 'HanXRQChr16g0532801' => 'han', 'Haze_00993' => 'cav', 'Haze_11750' => 'cav', 'Haze_14279' => 'cav', 'Haze_14283' => 'cav', 'Haze_18905' => 'cav', 'Haze_27392' => 'cav', 'Hma1.2p1_0000F.1_g000960' => 'hma', 'Hma1.2p1_0158F.1_g070070' => 'hma', 'Hma1.2p1_0212F.1_g090120' => 'hma', 'Hma1.2p1_0471F.1_g159490' => 'hma', 'Hma1.2p1_0511F.1_g169160' => 'hma', 'Hma1.2p1_1214F.1_g267600' => 'hma', 'HPP92_007959' => 'vpl', 'HPP92_012884' => 'vpl', 'HPP92_012911' => 'vpl', 'HPP92_020301' => 'vpl', 'HPP92_026947' => 'vpl', 'Hund08578' => 'sun', 'Hund10463' => 'sun', 'Hund13081' => 'sun', 'Hund13084' => 'sun', 'Hund13085' => 'sun', 'Hund13086' => 'sun', 'Lalb_Chr15g0084961' => 'lal', 'Lalb_Chr15g0087281' => 'lal', 'Lalb_Chr17g0346051' => 'lal', 'Lalb_Chr18g0053521' => 'lal', 'Lalb_Chr20g0116951' => 'lal', 'Lalb_Chr20g0118321' => 'lal', 'Lalb_Chr22g0353451' => 'lal', 'Lalb_Chr24g0398111' => 'lal', 'Lj2C519T13' => 'lonja', 'Lj2g0016436' => 'lja', 'Lj4A260T41' => 'lonja', 'Lj5A162T30' => 'lonja', 'Lj6A664T61' => 'lonja', 'Lj6A720G49' => 'lonja', 'Lj6g0003883' => 'lja', 'Lj6g0011884' => 'lja', 'LjContig00141g0019694' => 'lja', 'Lsat_1_v5_gn_2_68520' => 'lsa', 'Lsat_1_v5_gn_2_68621' => 'lsa', 'Lsat_1_v5_gn_3_63880' => 'lsa', 'Lsat_1_v5_gn_3_93861' => 'lsa', 'Lsat_1_v5_gn_5_153701' => 'lsa', 'Lsat_1_v5_gn_5_77601' => 'lsa', 'Lsat_1_v5_gn_6_5901' => 'lsa', 'Lsat_1_v5_gn_7_88881' => 'lsa', 'Manes.01G119500' => 'mes', 'Manes.02G077900' => 'mes', 'Manes.03G186600' => 'mes', 'Manes.04G061000' => 'mes', 'Mapoly0005s0209' => 'mpo', 'Mapoly0032s0051' => 'mpo', 'Mapoly0056s0068' => 'mpo', 'Mapoly0061s0088' => 'mpo', 'Mapoly0064s0057' => 'mpo', 'Mapoly0085s0097' => 'mpo', 'Mapoly0085s0098' => 'mpo', 'Mapoly0085s0099' => 'mpo', 'Mapoly0173s0020' => 'mpo', 'Mapoly3414s0001' => 'mpo', 'MBI03_g21262_MAGBIO' => 'mbi', 'MBI06_g00928_MAGBIO' => 'mbi', 'MBI08_g04317_MAGBIO' => 'mbi', 'MBI11_g07225_MAGBIO' => 'mbi', 'MBI12_g41338_MAGBIO' => 'mbi', 'MBI13_g37868_MAGBIO' => 'mbi', 'MBI15_g05552_MAGBIO' => 'mbi', 'MBI17_g23594_MAGBIO' => 'mbi', 'MBI17_g29607_MAGBIO' => 'mbi', 'MBI18_g14731_MAGBIO' => 'mbi', 'MBI19_g14008_MAGBIO' => 'mbi', 'MBI19_g23445_MAGBIO' => 'mbi', 'MBI19_g40825_MAGBIO' => 'mbi', 'MCO05G702' => 'mco', 'MD09G1270600' => 'mdo', 'MD13G1006600' => 'mdo', 'MD13G1180400' => 'mdo', 'MD14G1238700' => 'mdo', 'MD16G1001400' => 'mdo', 'MD16G1181300' => 'mdo', 'MD17G1268700' => 'mdo', 'Medtr2g021242' => 'mtr', 'Medtr2g021248' => 'mtr', 'Medtr2g021255' => 'mtr', 'Medtr3g065250' => 'mtr', 'Medtr5g077950' => 'mtr', 'Medtr6g071070' => 'mtr', 'Medtr8g062840' => 'mtr', 'MELO3C006577.2' => 'cme', 'MELO3C020230.2' => 'cme', 'MELO3C022828.2' => 'cme', 'MELO3C023599.2' => 'cme', 'Migut.D01194' => 'egut', 'Migut.G00254' => 'egut', 'Migut.H02226' => 'egut', 'Migut.K00920' => 'egut', 'Migut.N00140' => 'egut', 'MSTRG.11235' => 'ama', 'MSTRG.15659' => 'ama', 'MSTRG.2624' => 'ama', 'MSTRG.3703' => 'ama', 'MSTRG.4637' => 'ama', 'MSTRG.9367' => 'ama', 'Nitab4.5_0000059g0010' => 'nta', 'Nitab4.5_0000574g0130' => 'nta', 'Nitab4.5_0000777g0010' => 'nta', 'Nitab4.5_0001650g0160' => 'nta', 'Nitab4.5_0003070g0010' => 'nta', 'Nitab4.5_0007727g0010' => 'nta', 'Nitab4.5_0009686g0030' => 'nta', 'Nitab4.5_0009806g0020' => 'nta', 'Nitab4.5_0010543g0010' => 'nta', 'Nn1g02130' => 'nnu', 'Nn3g18357' => 'nnu', 'Nn3g18666' => 'nnu', 'Nn4g24359' => 'nnu', 'Nn4g26632' => 'nnu', 'Oeu001530.1' => 'oeu', 'Oeu011269.1' => 'oeu', 'Oeu012495.1' => 'oeu', 'Oeu023653.1' => 'oeu', 'Oeu030300.1' => 'oeu', 'Oeu037666.3' => 'oeu', 'Oeu046613.1' => 'oeu', 'Oeu049912.1' => 'oeu', 'Oeu060832.1' => 'oeu', 'Oeu061752.1' => 'oeu', 'Os02g0735200' => 'osa', 'Os03g0223400' => 'osa', 'Os03g0712800' => 'osa', 'Os04g0659100' => 'osa', 'Peaxi162Scf00095g00720' => 'pax', 'Peaxi162Scf00314g00419' => 'pax', 'Peaxi162Scf00562g00216' => 'pax', 'Peaxi162Scf00571g00521' => 'pax', 'Peaxi162Scf01350g00126' => 'pax', 'Peaxi162Scf01424g00014' => 'pax', 'PGR031G3907' => 'pgr', 'PGR042G1698' => 'pgr', 'PGR083G0777' => 'pgr', 'PGR142G2719' => 'pgr', 'PGSC0003DMG400004355' => 'stu', 'PGSC0003DMG400013235' => 'stu', 'PGSC0003DMG400014115' => 'stu', 'PGSC0003DMG400014454' => 'stu', 'PGSC0003DMG400014592' => 'stu', 'PGSC0003DMG400017703' => 'stu', 'PGSC0003DMG400023620' => 'stu', 'Phvul.001G229500' => 'pvu', 'Phvul.004G148300' => 'pvu', 'Phvul.006G155800' => 'pvu', 'Phvul.008G237400' => 'pvu', 'Phvul.008G237500' => 'pvu', 'Potri.004G085400' => 'ptr', 'Potri.005G093200' => 'ptr', 'Potri.007G069600' => 'ptr', 'Potri.008G200100' => 'ptr', 'Potri.010G029100' => 'ptr', 'Potri.012G043900' => 'ptr', 'Potri.015G034700' => 'ptr', 'Potri.017G127901' => 'ptr', 'Potri.017G131100' => 'ptr', 'Potri.017G138201' => 'ptr', 'Pp3c18_10760' => 'ppa', 'Pp3c18_10780' => 'ppa', 'Pp3c20_15070' => 'ppa', 'Pp3c20_22420' => 'ppa', 'Pp3c20_22820' => 'ppa', 'Pp3c21_8810' => 'ppa', 'Pp3c21_8940' => 'ppa', 'Prupe.1G148700' => 'ppe', 'Prupe.1G346600' => 'ppe', 'Prupe.3G166500' => 'ppe', 'Prupe.5G236300' => 'ppe', 'Psat0s353g0040' => 'psa', 'Psat0s690g0040' => 'psa', 'Psat1g183440' => 'psa', 'Psat1g185960' => 'psa', 'Psat2g046240' => 'psa', 'Psat5g120440' => 'psa', 'PSO017G7093' => 'pso', 'PSO063G3525' => 'pso', 'PSO170G3189' => 'pso', 'PSO210G3805' => 'pso', 'PSO302G0240' => 'pso', 'PSO339G1216' => 'pso', 'PSO339G3409' => 'pso', 'PSO478G1006' => 'pso', 'PSO782G3826' => 'pso', 'PSO832G0313' => 'pso', 'QL02p059170' => 'qlo', 'QL06p005909' => 'qlo', 'QL10p031401' => 'qlo', 'RcHm_v2.0_Chr3g0491191' => 'rch', 'RcHm_v2.0_Chr4g0419011' => 'rch', 'RcHm_v2.0_Chr4g0446601' => 'rch', 'RcHm_v2.0_Chr7g0178021' => 'rch', 'Rhsim04G0209200' => 'rsi', 'Rhsim04G0209300' => 'rsi', 'Rhsim04G0209400' => 'rsi', 'Rhsim10G0178400' => 'rsi', 'Sabra04G0056500' => 'sbr', 'Sabra05G0077300' => 'sbr', 'Sabra08G0160800' => 'sbr', 'Sabra12G0030800' => 'sbr', 'Sabra15G0028700' => 'sbr', 'Sabra17G0109300' => 'sbr', 'Sabra17G0114900' => 'sbr', 'SalBow1G7894' => 'sbo', 'SalBow2G1278' => 'sbo', 'SalBow3G1278' => 'sbo', 'SalBow5G1264' => 'sbo', 'SalBow5G2651' => 'sbo', 'SalBow5G5140' => 'sbo', 'SalBow5G5516' => 'sbo', 'SalBow6G6420' => 'sbo', 'SalBow8G0662' => 'sbo', 'SalBow8G1593' => 'sbo', 'Sc10g0004850' => 'sci', 'Sc13g0003840' => 'sci', 'Sed0000546' => 'sed', 'Sed0005712' => 'sed', 'Sed0008014' => 'sed', 'Sed0009637' => 'sed', 'Sed0012671' => 'sed', 'Sed0015194' => 'sed', 'Sed0024376' => 'sed', 'SEGI_11791' => 'sgi', 'SEGI_29203' => 'sgi', 'SEGI_32643' => 'sgi', 'SEGI_39444' => 'sgi', 'SGA_v2.0_scaffold115G32101' => 'sas', 'SGA_v2.0_scaffold142G35622' => 'sas', 'SGA_v2.0_scaffold45G17158' => 'sas', 'SHI11771' => 'shi', 'SHI31060' => 'shi', 'SMO137G0391' => 'smo', 'SMO356G0585' => 'smo', 'Solyc01g080280.3' => 'sly', 'Solyc04g014510.3' => 'sly', 'Solyc05g051250.3' => 'sly', 'Solyc11g011380.2' => 'sly', 'Solyc12g041870.3' => 'sly', 'Sopen01g032070' => 'spe', 'Sopen04g006650' => 'spe', 'Sopen05g029630' => 'spe', 'Sopen11g006180' => 'spe', 'Sopen12g020640' => 'spe', 'Sp1g35420' => 'spa', 'Sp3g15940' => 'spa', 'Sp5g21260' => 'spa', 'Sp6g27590' => 'spa', 'Sp7g04500' => 'spa', 'Sp7g06630' => 'spa', 'TAR362G1153' => 'tar', 'TAR369G0214' => 'tar', 'TAR369G0254' => 'tar', 'TAR371G1147' => 'tar', 'TAR374G0659' => 'tar', 'TAR622G0114' => 'tar', 'TAR622G0676' => 'tar', 'TAR629G3187' => 'tar', 'TAR636G0505' => 'tar', 'TAR636G3388' => 'tar', 'THA.LOC104802940' => 'tha', 'THA.LOC104805629' => 'tha', 'THA.LOC104815345' => 'tha', 'THA.LOC104820336' => 'tha', 'THA.LOC104821826' => 'tha', 'THA.LOC104823838' => 'tha', 'THA.LOC104826605' => 'tha', 'Thecc.02G160700' => 'tca', 'Thecc.03G061500' => 'tca', 'Thecc.04G053700' => 'tca', 'Thecc.04G219100' => 'tca', 'Thhalv10004280m.g' => 'esa', 'Thhalv10011613m.g' => 'esa', 'Thhalv10013948m.g' => 'esa', 'Thhalv10018774m.g' => 'esa', 'Thhalv10021026m.g' => 'esa', 'Thhalv10027817m.g' => 'esa', 'TPR.G18383' => 'tpr', 'TPR.G24906' => 'tpr', 'TPR.G28916' => 'tpr', 'TPR.G30014' => 'tpr', 'TWI09G1354' => 'twi', 'TWI15G1157' => 'twi', 'TWI53G1731' => 'twi', 'TWI74G0184' => 'twi', 'TWI74G1221' => 'twi', 'TWI77G1017' => 'twi', 'unitig_0.g5' => 'ugi', 'unitig_699.g19812' => 'ugi', 'unitig_747.g21323' => 'ugi', 'unitig_748.g8356' => 'ugi', 'unitig_748.g8467' => 'ugi', 'unitig_899.g14821' => 'ugi', 'vmacro07710' => 'vma', 'vmacro08254' => 'vma', 'VMungo0464G1202' => 'vmu', 'VMungo0464G1732' => 'vmu', 'VMungo0647G0106' => 'vmu', 'VMungo0647G2143' => 'vmu', 'VMungo1383G2004' => 'vmu', 'Zm00001eb009090' => 'zma', 'Zm00001eb054990' => 'zma', 'Zm00001eb190340' => 'zma', 'Zm00001eb253820' => 'zma', 'Zm00001eb399860' => 'zma', 'Zm00001eb432580' => 'zma' ) $gf_id = 'HOM05D000887' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000887' ) $data_identifier = 'HOM05D000887' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 5, 'amhyb' => (int) 3, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 15, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 24, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 4, 'cre' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 7, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 11, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 15, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 16, 'cav' => (int) 6, 'hma' => (int) 6, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 4, 'mpo' => (int) 10, 'mbi' => (int) 13, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 10, 'qlo' => (int) 3, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 10, 'sci' => (int) 2, 'sed' => (int) 7, 'sgi' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 6, 'vma' => (int) 2, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb432580' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1